ANATOMIX is a beamline for X-ray tomography on the micro- and nanoscale, in absorption and phase contrast. It operates in the energy range from 5 keV upward and allows its users to obtain two- and three-dimensional radiographic images of bulk volume samples of macroscopic size (up to several cm thickness). For smaller samples, a spatial resolution down to 50 nm (20 nm pixel size) can be achieved. Real-time studies are possible at speeds of currently up to one microtomography scan per second; higher speeds up to 20 volume scans per second (50 ms per scan) have been demonstrated.

A flexible sample interface enables in situ and/or operando studies under conditions similar to the natural or working environment of the samples (temperature, humidity, mechanical load, transport processes). Biological samples can be measured without dehydration and, in many cases, without chemical fixation. With suitable sample preparation, cellular imaging without cryogenic environment is possible.

The beamline currently offers two spectral modes:

  • filtered white beam;
  • monochromatic beam from a double-crystal monochromator (DCM, ΔE/E ≈ 10-4, up to ≈ 25 keV).

Two types experimental stations cover different ranges of spatial resolution:

  • Parallel-beam microtomography in absorption and phase contrast – spatial resolution down to 1 µm (smallest pixel size 300 nm; maximum possible beam size: 40 mm x 15 mm [H x V]).
  • Full-field transmission X-ray microscope (TXM, nanotomography) – spatial resolution down to 50 nm (pixel size from 20 to 80 nm; field of view 40 µm x 40 µm; discrete working energy values).

Like all other SOLEIL beamlines, ANATOMIX is open to users from all countries, free of charge when applying for beamtime via a proposal. If you are considering measurements on ANATOMIX, visit our beamline web page and check out the ANATOMIX beamline user guide (PDF). And, of course, contact the beamline staff for advice.

ANATOMIX is an Equipment of Excellence (EQUIPEX) funded by the Investments for the Future program of the French National Research Agency (ANR), project NanoimagesX, grant no. ANR-11-EQPX-0031.

Beamline Energy Range
5 - 50 [keV]
Max Flux On Sample
1 * 1014 [ph/s] @ 12 [keV]
Spot Size On Sample Hor
0.5 - 40 [mm]
40 [um]
Spot Size On Sample Vert
0.5 - 15 [mm]
40 [um]
Photon Sources

U18 in vacuum undulator

Type
Undulator
Energy Range
5 - 50 [keV]
Period
18 [mm]
Endstations or Setup

Microtomography

Description
Parallel-beam microtomography in absorption and phase contrast – spatial resolution down to 1 µm (smallest pixel size 300 nm; maximum possible beam size: 40 mm x 15 mm [H x V]).

Sample

Sample Type
Crystal, Amorphous, Fiber, Powder, Gel, Liquid

TXM nanotomography

Description
Full-field transmission X-ray microscope (TXM, nanotomography) – spatial resolution down to 100 nm (pixel size from 20 to 80 nm; field of view 40 µm x 40 µm; discrete working energy values);

Sample

Sample Type
Crystal, Amorphous, Fiber, Powder, Gel, Liquid
Detectors

Indirect detection schemes

Type
Modular detector systems covering magnifications from 0.5x to 50x, combining different scintillators, lens systems, and sCMOS cameras
Time Resolved
Yes

Detection

Detected Particle
Photon
contacts
Timm Weitkamp
Mario Scheel
Jonathan Perrin
Techniques
Imaging
  • X-ray microscopy
  • X-ray tomography
Disciplines
Chemistry
  • Electrochemistry
Earth Sciences & Environment
  • Ecosystems & Biodiversity
  • Global change & Climate observation
  • Marine science/Oceanography
  • Plant science
  • Technique Development - Earth Sciences & Environment
Energy
  • Fusion
  • Sustainable energy systems
  • Technique Development - Energy
Engineering & Technology
  • Aeronautics
  • Technique Development - Engineering & Technology
  • Transport
Humanities
  • Cultural Heritage
Life Sciences & Biotech
  • Agriculture & Fisheries
  • Biophysics
  • Evolutionary science
  • Food quality and safety
  • Medicine
Material Sciences
  • Knowledge based multifunctional materials
  • Metallurgy
  • Technique Development - Material Sciences
Physics
  • Astronomy/Astrophysics/Astroparticles
  • Hard condensed matter - electronic properties
  • Soft condensed matter physics
Address
Synchrotron SOLEIL
L'Orme des Merisiers, Départementale 128, 91190 Saint-Aubin, France
On OpenStreetMap: https://osm.org/go/0BOQPBT0A-
control/Data analysis
Control Software Type
  • Standard SOLEIL Tango interface and/or Spyc command-line interface
Data Output Type
  • Radiographs; tomographic volume data
Data Output Format
  • Reconstructed volumes: 32-bit floating-point data in raw binary format, usually one big file per tomography scan. Can be converted to other formats or bit depth if desired.
Softwares For Data Analysis
  • PyHST2 (tomographic reconstruction); ImageJ/Fiji (image inspection); Avizo, Dragonfly (3D visualization)
Equipment That Can Be Brought By The User
In-situ environments: traction or compression rigs, cold cells, ovens or furnaces, etc.